GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| THYM | cis | rs7849270 | 1 | rs3124512 | chr9:131903881 | CRAT | chr9:131857075-131873070:- | -0.45 | -5.28 | 8.1E-7 | Blood metabolite ratios |
| THYM | cis | rs7849270 | 1 | rs3124513 | chr9:131904593 | CRAT | chr9:131857075-131873070:- | -0.42 | -4.98 | 2.82E-6 | Blood metabolite ratios |
| THYM | cis | rs7849270 | 1 | rs3124514 | chr9:131904608 | CRAT | chr9:131857075-131873070:- | -0.42 | -4.98 | 2.82E-6 | Blood metabolite ratios |
| THYM | cis | rs2243480 | 1 | rs313798 | chr7:65493031 | CCT6P1 | chr7:65216092-65228661:+ | 0.65 | 5.41 | 4.64E-7 | Diabetic kidney disease |
| THYM | cis | rs2243480 | 1 | rs313799 | chr7:65494330 | CCT6P1 | chr7:65216092-65228661:+ | 0.63 | 5.32 | 6.9E-7 | Diabetic kidney disease |
| THYM | cis | rs2243480 | 1 | rs313802 | chr7:65516373 | CCT6P1 | chr7:65216092-65228661:+ | 0.67 | 5.68 | 1.48E-7 | Diabetic kidney disease |
| THYM | cis | rs2243480 | 1 | rs313803 | chr7:65514731 | CCT6P1 | chr7:65216092-65228661:+ | 0.67 | 5.68 | 1.48E-7 | Diabetic kidney disease |
| THYM | cis | rs2243480 | 1 | rs313807 | chr7:65499481 | CCT6P1 | chr7:65216092-65228661:+ | 0.63 | 5.32 | 6.9E-7 | Diabetic kidney disease |
| THYM | cis | rs2243480 | 1 | rs313809 | chr7:65499983 | CCT6P1 | chr7:65216092-65228661:+ | 0.67 | 5.68 | 1.48E-7 | Diabetic kidney disease |
| THYM | cis | rs2243480 | 1 | rs313813 | chr7:65503500 | CCT6P1 | chr7:65216092-65228661:+ | 0.63 | 5.21 | 1.09E-6 | Diabetic kidney disease |
| THYM | cis | rs2243480 | 1 | rs313814 | chr7:65503293 | CCT6P1 | chr7:65216092-65228661:+ | 0.67 | 5.68 | 1.48E-7 | Diabetic kidney disease |
| THYM | cis | rs2243480 | 1 | rs313820 | chr7:65574466 | CCT6P1 | chr7:65216092-65228661:+ | 0.64 | 5.31 | 7.1E-7 | Diabetic kidney disease |
| THYM | cis | rs2243480 | 1 | rs313824 | chr7:65581207 | CCT6P1 | chr7:65216092-65228661:+ | 0.64 | 5.31 | 7.1E-7 | Diabetic kidney disease |
| THYM | cis | rs2243480 | 1 | rs313831 | chr7:65551226 | CCT6P1 | chr7:65216092-65228661:+ | 0.65 | 5.41 | 4.64E-7 | Diabetic kidney disease |
| THYM | cis | rs2243480 | 1 | rs313832 | chr7:65550891 | CCT6P1 | chr7:65216092-65228661:+ | 0.65 | 5.41 | 4.64E-7 | Diabetic kidney disease |